NodMutDB

Query NodMutDB

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Gene List



Genes Matched Query: 492

Species: Medicago truncatula
 
Gene Symbol Primary Locus Gene Function Gene Location #Mutants
API API The API gene product is required throughout rhizobial infection of host tissues located on the upper arm of linkage group 4, between markers MTIC331 and in an interval spanning approximately 2.8 centimorgans 2 
DMI1 AY497771 Predicted to be a membrane-spanning protein and may participate in the formation of a receptor-complex for symbiotic signals Chromosome 2; LG 2; linked to markers 1N1R and DK407-L; close to the telomeric region of the north arm 5 
DMI2 (NORK) AJ418369 nodulation receptor kinase, which is predicted to function in the Nod-factor perception/transduction system  Chromosome 5; LG 5; linked to markers PG03 and PJ06; close to the pericentromeric region 6 
DMI3 AY502066 Ca2+ and calmodulin-dependent protein kinase Chromosome 8; LG 8; mapped to the south arm of chromosome, between the two markers SDP1 and PU01 9 
DNF1 DNF1 mutant is defective in nitrogen fixation  2 
DNF2 DNF2 mutant is defective in nitrogen fixation  1 
DNF3 DNF3 mutant is defective in nitrogen fixation  1 
DNF4 DNF4 mutant is defective in nitrogen fixation  1 
DNF5 DNF5 mutant is defective in nitrogen fixation  1 
DNF6 DNF6 mutant is defective in nitrogen fixation  1 
DNF7 DNF7 mutant is defective in nitrogen fixation  1 
ENOD11 AJ297721 putative repetitive proline-rich protein   
ENOD12 X68032 early nodulin gene LG 3  
ENOD16 X99466 early nodulin ENOD16 LG 8  
ENOD20 X99467 early nodulin gene   
ENOD40-1 X80262 M. truncatula enod40 gene for non-translatable RNA LG 5 2 
ENOD40-2 X80264 M. truncatula enod40 gene for non-translatable RNA  2 
ENOD8.1 ENOD8.1 nodule-specific esterase   
ERN1 (BIT1, PDL) BIT1 ERF required for nodulation between the genetic markers TC87156_1 and TC80512_1 on LG7 2 
ERN2 ERN2 AP2/ERF transcription factor   
ERN3 ERN3 AP2/ERF transcription factor   
GSI AJ238212 glutamine synthetase I   
HCL HCL control root hair curling  3 
IPD3 EF117279  IPD3 is a nuclear protein which interacts with the symbiotic DMI3 calcium- and calmodulin-dependent protein kinase mapped to the short arm of chromosome 5 (LG5) between markers MtB93 and MtB108 2 
LATD LATD mutant is lateral root organ defective top of LG1 (tightly linked to R15J11L) 1 
LIN LIN mutant has lumpy infections chromosome 1; lower arm of LG1; positioned between markers DSI and SCP 2 
LSS LSS mutant is hypernodulator; shoot control of phenotype, dominant interaction with sunn Chromosome 4; LG 4;  
LYK1 LYK1 LysM domain-containing receptor-like kinase 1   
LYK2 LYK2 LysM domain-containing receptor-like kinase 2   
LYK3 LYK3 LysM domain-containing receptor-like kinase 3  1 
LYK4 LYK4 LysM domain-containing receptor-like kinase 4  1 
LYK5 LYK5 LysM domain-containing receptor-like kinase 5   
LYK6 LYK6 LysM domain-containing receptor-like kinase 6   
LYK7 LYK7 LysM domain-containing receptor-like kinase 7   
MtAnn1 AJ441322 annexin   
MtCPK3 DQ454073 calcium dependent protein kinase 3  1 
MtCRE1 TC109250 cytokinin receptor  1 
MtFNSII-1 CYP93B10 Flavone synthase II  1 
MtFNSII-2 CYP93B11 Flavone synthase II  1 
MtHAP2-1 MtC10582 CCAAT-binding transcription factor  4 
MtHMGR1 EU302813 3-hydroxy-3-methylglutaryl coenzyme A reductase 1  1 
MtIRE AY770392 Medicago truncatula IRE-like AGC kinase Chromosome 5, LG 5; The MtIRE gene spans a genomic region of 9.1 kbp and consists of 17 exons and 16 introns  
MtMMPL1 (MtN9) Y18249 MtMMPL1 early nodulin is a novel member of the matrix metalloendoproteinase family with a role in Medicago truncatula infection by Sinorhizobium meliloti Chromosome 5, LG 5 1 
MtN1 Y10456 nodulin gene LG 6  
MtN12 Y15369 nodulin gene   
MtN13 Y10455 nodulin gene   
MtN3 AJ307887 early nodulin gene   
MtN5 Y15371 nodulin gene   
MtN6 Y18225 nodulin gene   
MtNIN MtNIN early nodulin Nodule Inception1  2 
MtPT1 AF000354 phosphate transporter   
MtPT2 AF000355 phosphate transporter   
MtRBP1 MtRBP1 MtRBP1 interacts with the MtENOD40 RNA, and is exported into the cytoplasm during legume nodule development in the region expressing MtENOD40.   
MtRR1 TC95950 cytokinin signaling response regulator B-type   
MtRR4 TC103991 cytokinin signaling response regulator A-type   
MtSYP132 TC86779 may function in infection thread development or growth and the early stages of symbiosome formation   
MtSucS1 AJ131943 nodule-enhanced sucrose synthase  1 
Mtsym14 Mtsym14 Medicago truncatula symbiotic gene  1 
Mtsym15 Mtsym15 Medicago truncatula symbiotic gene  1 
Mtsym16 Mtsym16 Medicago truncatula symbiotic gene  1 
Mtsym17 Mtsym17 Medicago truncatula symbiotic gene  1 
Mtsym18 Mtsym18 Medicago truncatula symbiotic gene  1 
Mtsym19 Mtsym19 Medicago truncatula symbiotic gene  1 
Mtsym20 Mtsym20 Medicago truncatula symbiotic gene  2 
Mtsym21 Mtsym21 Medicago truncatula symbiotic gene  1 
NFP NFP may be Nod factor receptor or constitute part of a receptor complex Chromosome 5; LG 5; linked to markers PK12, B07494 and PV02 2 
NIP NIP mutant has numerous infections with polyphenolics  3 
NSP1 NSP1 nodulation signaling pathway  2 
NSP2 NSP2 nodulation signaling pathway Chromosome 3; LG 3; linked to marker DK201R 3 
PDL (ERN, BIT1) PDL mutant has poodle-like root hair clusters linked to molecular marker 58T  
PI-PLC PI-PLC PtdIns-specific phospholipase C   
PI3K PI3K phosphatidylinositol 3-kinase   
PR-1 X79778 pathogenesis-related PR-1 gene   
PRP4 L23504 early nodulin (protein-rich protein PRP4)   
RAE RAE mutant supresses hypernodulation defect of sunn-1 allele, not root length defect   
RBP1 AJ508392 RNA-binding protein RBP1   
RDN RDN mutant is hypernodulator; recessive, root control of phenotype   
RIP1 U16727 peroxidase precursor LG 5  
RIT RIT mutant is defective in root hairs, infection threads and trichomes LG 3 1 
SKL (MtSkl1) SKL regulate the number and distribution of successful infection events Chromosome 7; LG 7; linked to molecular marker SLR1 6 
SLI SLI mutant has sluggish infections   
SUNN SUNN regulate nodule organogenesis Chromosome 4; LG 4; linked to molecular markers PCT and NUM1 4 
SYM1 SYM1 Medicago truncatula symbiotic gene  1 
SYM6 SYM6 condition Sinorhizobium strain-specific nitrogen fixation  Chromosome 8; LG 8; linked to markers PI12 and L12200 1 

Species: Sinorhizobium meliloti
 
Gene Symbol Primary Locus Gene Function Gene Location #Mutants
SMb21188 SMb21188putative acyltransferase, possibly surface-saccharide specific acetyltransferase protein pSymB:938008..939141 1 
SMb21189 SMb21189putative glycosyltransferase protein pSymB:939159..940262 1 
SMb21190 SMb21190putative glycosyltransferase protein pSymB:940264..941301 2 
SMc00717 SMc00717PUTATIVE ATP-BINDING ABC TRANSPORTER PROTEIN 2863737..2864360 1 
SMc01113 SMc01113CONSERVED HYPOTHETICAL PROTEIN 441865..442371 1 
SMc02909 SMc02909PUTATIVE TRANSGLYCOSYLASE TRANSMEMBRANE PROTEIN 263817..265055 1 
acpXL SMc04278PROBABLE ACYL CARRIER PROTEIN complement(2101762..2102049) 1 
actP SMa1013ActP copper transport ATPase pSymA:560686..563166  
actR SMc02584TRANSCRIPTION REGULATOR PROTEIN complement(72733..73317)  
actS SMc02585SENSOR HISTIDINE KINASE TRANSMEMBRANE PROTEIN complement(73504..74805)  
aniA SMc03880carbon flux regulator, anaerobically induced gene A 3547948..3548526 2 
asnO SMb20481putative asparagine synthetase (glutamine amidotransferase) protein pSymB:494919..496694 1 
bacA SMb20999putative transport protein, essential for bacteroid development protein pSymB:complement(1235141..1236403) 25 
bioS SMc02061BIOTIN-REGULATED PROTEIN 1656033..1656686 4 
bluB SMc00166PUTATIVE OXIDOREDUCTASE NAD PROTEIN complement(1998826..1999509) 4 
catC (katC) SMb20007probable catalase C protein pSymB:10154..12271 3 
cbrA SMc00776PUTATIVE SENSOR HISTIDINE KINASE PROTEIN complement(793692..797096) 1 
ccmC SMc03849PUTATIVE HEME EXPORTER C (CYTOCHROME C-TYPE BIOGENESIS PROTEIN) TRANSMEMBRANE 3515202..3515972 1 
chvG (exoS) SMc04446HISTIDINE KINASE SENSORY TRANSMEMBRANE PROTEIN complement(49252..51039) 7 
chvI SMc02560TRANSCRIPTIONAL REGULATORY PROTEIN complement(51419..52141) 2 
cycH SMc02361CYTOCHROME C-TYPE BIOGENESIS TRANSMEMBRANE PROTEIN 1107820..1108965 1 
cycJ SMc02362CYTOCHROME C-TYPE BIOGENESIS TRANSMEMBRANE PROTEIN 1108962..1109414  
cycK SMc02363CYTOCHROME C-TYPE BIOGENESIS TRANSMEMBRANE PROTEIN 1109411..1111441 1 
cycL SMc02364CYTOCHROME C-TYPE BIOGENESIS TRANSMEMBRANE PROTEIN 1111502..1111957  
cysG SMc01053PROBABLE SIROHEME SYNTHASE PROTEIN 1583260..1584717 1 
dctA SMb20611C4-dicarboxylate transport protein pSymB:complement(1626577..1627902) 10 
dctB SMb20612C4-dicarboxylate transport sensor protein pSymB:1628134..1629999 25 
dctD SMb20613C4-dicarboxylate transport transcriptional regulatory protein pSymB:1630003..1631385 16 
dctM SMb21351putative C4-dicarboxylate large membrane transport protein pSymB:complement(1016547..1017830)  
dctP SMb21353putative periplasmic C4-dicarboxylate transport protein pSymB:complement(1018487..1019464)  
dctQ SMb21352putative C4-dicarboxylate small membrane transport protein pSymB:complement(1017835..1018332)  
ddhB SMb21417putative CDP-glucose 4,6-dehydratase protein pSymB:1346712..1347782 2 
degP1 SMc02365PROTEASE PRECURSOR PROTEIN 1112257..1113771 4 
dme SMc00169NAD-MALIC ENZYME OXIDOREDUCTASE PROTEIN 1993451..1995763 6 
exoA SMb20957glucosyltransferase protein pSymB:1184469..1185461 22 
exoB SMb20942UDP glucose 4-epimerase protein pSymB:1168150..1169136 30 
exoD SMc00353PUTATIVE TRANSMEMBRANE PROTEIN complement(308106..308828) 10 
exoF1 SMb20945hypothetical outer membrane protein, similar to Wza, OMA family pSymB:complement(1171541..1172806) 19 
exoF2 SMb21073putative OMA family outer membrane saccharide export protein, similar to ExoF pSymB:complement(709463..710830)  
exoF3 SMb21245putative OMA family outer membrane protein precursor, similar to ExoF pSymB:813621..814871  
exoH SMb20954succinyltransferase protein pSymB:1181238..1182350 12 
exoI SMb20951putative periplasmatic protein pSymB:1179773..1180348 2 
exoI2 SMb21662putative periplasmic protein pSymB:complement(669334..669843)  
exoK SMb20955endo-beta-1,3-1,4-glycanase protein pSymB:1182356..1183165 6 
exoL SMb20956putative glucosyltransferase protein pSymB:1183261..1184472 2 
exoM SMb20958glucosyltransferase protein pSymB:1185461..1186390 16 
exoN SMb20960UDPglucose pyrophosphorylase protein pSymB:1187438..1188343 5 
exoN2 SMc04023PROBABLE UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PROTEIN complement(3021043..3021930)  
exoO SMb20959glucosyltransferase protein pSymB:1186387..1187433 1 
exoP SMb20961protein tyrosine kinase, MPA1 family, involved in succinoglycan chain-length determination pSymB:1188398..1190758 14 
exoP2 SMb21070putative MPA1 family auxiliary surface saccharide export protein, similar to chain-length determination proteins pSymB:705774..707672  
exoQ SMb20944putative polysaccharide polymerase, similar to Wzy protein pSymB:complement(1170226..1171533) 3 
exoR SMc02078EXOPOLYSACCHARIDE BIOSYNTHESIS REGULATORY PROTEIN 1637310..1638116 10 
exoT SMb20950putative transport protein, similar to Wzx pSymB:1177910..1179394 2 
exoU SMb20948glucosyltransferase protein pSymB:1174743..1175771 3 
exoV SMb20949putative pyruvyltransferase protein pSymB:complement(1175762..1176712) 6 
exoW SMb21690glucosyltransferase protein pSymB:complement(1176826..1177785) 2 
exoX SMb20947posttranscriptional regulator, repressor protein pSymB:1174312..1174608 9 
exoY SMb20946galactosyltransferase protein pSymB:complement(1172859..1173539) 18 
exoZ SMb20943acetyltransferase protein pSymB:complement(1169222..1170175) 2 
expA1 (wgaA) SMb21319putative membrane-anchored protein pSymB:986060..987532 5 
expA10 (wgaJ) SMb21327putative dTDP-4-dehydrorhamnose reductase protein pSymB:996326..997228 1 
expA23 (wgaB) SMb21320putative bifunctional glycosyltransferase, forming beta-glycosyl and alpha-glycosyl linkages protein pSymB:987519..990200 8 
expA4 (wgaD) SMb21321putative membrane-anchored protein pSymB:990235..991413  
expA5 (wgaE) SMb21322putative membrane-anchored protein pSymB:991456..992628 1 
expA6 (wgaF) SMb21323putative protein, probably exported to periplasma pSymB:992615..993787  
expA7 (wgaG) SMb21324putative glucose-1-phosphate thymidyltransferase protein pSymB:993810..994691  
expA8 (wgaH) SMb21325putative dTDP-4-dehydrorhamnose 3,5-epimerase protein pSymB:994684..995247 1 
expA9 (wgaI) SMb21326putative dTDP-D-glucose 4,6-dehydratase protein pSymB:995259..996329  
expC (wgcC) SMb21318putative glycosyltransferase, forming alpha-glycosyl linkages protein pSymB:984623..985876 6 
expD1(wgdA) SMb21316putative ABC transporter protein, fused ATP-binding and membrane-spanning components, secretes ExpE1 pSymB:complement(981935..983704) 7 
expD2 (wgdB) SMb21315putative protein secretion protein, HlyD family membrane fusion protein, secretes ExpE1 pSymB:complement(980517..981938) 4 
expE1 (wgeA) SMb21314putative secreted calcium-binding protein pSymB:complement(979583..980242) 4 
expE2 (wgeB) SMb21313putative bifunctional glycosyltransferase, forming alpha-glycosyl and beta-glycosyl linkages protein pSymB:complement(977203..979452) 5 
expE3 (wgeC) SMb21312putative methyltransferase protein pSymB:complement(976361..977206) 1 
expE4 (wgeD) SMb21311putative glycosyltransferase, forming alpha-gylcosyl linkages protein pSymB:complement(975102..976364)  
expE5 (wgeE) SMb21310putative membrane-anchored protein pSymB:complement(974386..975090)  
expE6 (wgeF) SMb21309putative membrane protein pSymB:complement(972161..974377)  
expE7 (wgeG) SMb21308putative glycosyltransferase, forming alpha glycosyl linkages protein pSymB:complement(970842..972164) 1 
expE8 (wgeH) SMb21307putative protein pSymB:complement(969820..970797) 1 
expG (mucS, wggR) SMb21317transcriptional activator of exopolysaccharide II synthesis, MarR family protein pSymB:983901..984485 5 
expR SMc03896quorum sensing, LuxR homolog, activation of galactoglucan synthesis complement(3566370..3568434) 6 
fabG SMc00572PROBABLE 3-OXOACYL-ACYL-CARRIER PROTEIN REDUCTASE 1241639..1242376 1 
fadD SMc02162PROBABLE LONG-CHAIN-FATTY-ACID--COA LIGASE PROTEIN complement(532686..534386)  
fdxN SMa0811FdxN ferredoxin pSymA:complement(443981..444175) 7 
feuP SMc00458PROBABLE TRANSCRIPTION REGULATOR PROTEIN 1104977..1105648 2 
feuQ SMc00129PROBABLE SENSOR HISTIDINE KINASE PROTEIN 1105638..1107023 1 
fixA SMa0822FixA electron transfer flavoprotein beta chain pSymA:complement(450461..451339) 3 
fixB SMa0819FixB electron transfer flavoprotein alpha chain pSymA:complement(449368..450429) 2 
fixC SMa0817FixC oxidoreductase pSymA:complement(448049..449356) 1 
fixG SMa1211FixG Iron sulfur membrane protein pSymA:complement(665557..667131) 9 
fixH SMa1210FixH nitrogen fixation protein pSymA:complement(665057..665560) 5 
fixI1 SMa1209FixI1 copper transport ATPase pSymA:complement(662787..665060) 15 
fixI2 SMa0621FixI2 E1-E2 type cation ATPase pSymA:331477..333744  
fixJ SMa1227FixJ Transcriptional activator pSymA:complement(672774..673388) 9 
fixK1 SMa1225FixK1 Transcriptional activator pSymA:complement(671613..672248) 3 
fixK2 SMa0762FixK2 transcription regulator pSymA:412790..413425 1 
fixL SMa1229FixL Oxygen regulated histidine kinase pSymA:complement(673381..674898) 11 
fixN1 SMa1220FixN1 Heme b / copper cytochrome c oxidase subunit pSymA:complement(669143..670762)  
fixN2 SMa0765FixN2 cytochrome c oxidase polypeptide I pSymA:414187..415806  
fixN3 SMa0612FixN3 cytochrome c oxidase subunit 1 pSymA:326972..328627  
fixO1 SMa1216FixO1 c-type cytochrome pSymA:complement(668398..669129)  
fixO2 SMa0766FixO2 cytochrome c oxidase pSymA:415818..416549  
fixO3 SMa0615FixO3 cytochrome-c oxidase subunit pSymA:328632..329384  
fixP1 SMa1213FixP1 Di-heme cytochrome c pSymA:complement(667360..668229)  
fixP2 SMa0769FixP2 cytochrome c oxidase pSymA:416717..417580  
fixP3 SMa0617FixP3 cytochrome c oxidase membrane anchored subunit pSymA:329568..330449  
fixQ1 SMa1214FixQ1 cbb3-type cytochrome oxidase pSymA:complement(668233..668385)  
fixQ2 SMa0767FixQ2 cbb3-type cytochrome oxidase pSymA:416561..416713  
fixQ3 SMa0616FixQ3 nitrogen fixation protein pSymA:329407..329577  
fixS1 SMa1208FixS1 nitrogen fixation protein pSymA:complement(662623..662790)